Science Tools
Alignment tools
Clustering of Motifs upstream of Coexpressed Genes from Microarray Data
Clustering of Motifs upstream of Coexpressed Genes from Microarray Data
BioProspector | http://bioprospector.stanford.edu/ |
CREME |
https://creme.dcode.org/
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Clustering of TFBS or Motifs
Clustering of TFBS or Motifs
Cister | https://zlab.bu.edu/~mfrith/cister.shtml |
GALA | https://globin.bx.psu.edu/ |
RVISTA | https://rvista.dcode.org/ |
TraFaC | https://trafac.cchmc.org/trafac/index.jsp
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Genetic Resources/Tools
Genetic Resources/Tools
NEBCutter http://tools.neb.com/NEBcutter2/index.php Primer3 https://bioinfo.ut.ee/primer3-0.4.0/primer3/ Primer3Plus http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi Sequence Manipulation Suite http://www.bioinformatics.org/sms/index.html
Genome Databases and Browsers
Genome Databases and Browsers
Genome Evolutionary Comparative Analysis Tools
Genome Evolutionary Comparative Analysis Tools
Name | URL | Genomic Sequences from |
ECR Browser | https://ecrbrowser.dcode.org/ | human/mouse/fugu |
GALA | https://globin.bx.psu.edu/ | human/mouse |
UCSC | http://www.genome.ucsc.edu/ | human/mouse/rat |
VISTA | http://pipeline.lbl.gov/ | human/mouse/rat
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Molecular Biology
Pattern Finding
Pattern Finding
ANN-Spec | http://www.cbs.dtu.dk/services/DNAarray/ann-spec.html |
MEME |
http://meme.sdsc.edu/meme4_4_0/intro.html |
Phylogenetic Footprinting
Phylogenetic Footprinting
FootPrinter | http://bio.cs.washington.edu/footprinter |
EShadow |
https://eshadow.dcode.org/
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Primer Design
Primer Design
Transcription Factor Binding Site Analysis
Transcription Factor Binding Site Analysis
CONSITE | http://consite.genereg.net |
RVISTA | https://rvista.dcode.org/ |
TESS | http://www.cbil.upenn.edu/tess/ |
TRANSFAC |
https://digitalinsights.qiagen.com/
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